Validation Results for NCPIFHIRImplementationGuide

Generated Fri Sep 15 21:11:50 UTC 2023, FHIR version 4.0.1 for NCPI-FHIR-Implementation-Guide#0.2.0 (canonical = https://nih-ncpi.github.io/ncpi-fhir-ig (history)). See Errors Only

Quality Checks
Publisher Version:IG Publisher Version: v1.4.5
Publication Code:n/a . PackageId = NCPI-FHIR-Implementation-Guide, Canonical = https://nih-ncpi.github.io/ncpi-fhir-ig
Realm Check for n/a:
  • n/a
Publication Request:
  • This IG has never been published
  • This IG has never been published, so the version should start with '0.' or include a patch version e.g. '-ballot'
  • No publication request found
Supressed Messages:No Suppressed Issues
Dependency Checks:
PackageVersionFHIRCanonicalWeb BaseComment
.. NCPI-FHIR-Implementation-Guide0.2.0R4https://nih-ncpi.github.io/ncpi-fhir-ig
... hl7.terminology.r45.3.0 MR4http://terminology.hl7.orghttp://terminology.hl7.org/5.3.0
... hl7.fhir.uv.extensions.r41.0.0 MR4http://hl7.org/fhir/extensionshttp://hl7.org/fhir/extensions/1.0.0
... hl7.fhir.us.core3.1.1 OR4http://hl7.org/fhir/us/corehttp://hl7.org/fhir/us/core/STU3.1.1Latest Release is 6.1.0
Templates: fhir.base.template#current. Tools: current
Dependent IGs:no references
Global Profiles:(none declared)
HTA Analysis:Non-HL7 Igs are exempt from terminology dependency analysis
R5 Dependencies:(none)
Draft Dependencies:
Modifier Extensions:(none)
Previous Version Comparison: Unable to compare with previous version: Unable to find version history at https://nih-ncpi.github.io/ncpi-fhir-ig (Problem #1 with package-list.json at https://nih-ncpi.github.io/ncpi-fhir-ig: Invalid HTTP response 404 from https://nih-ncpi.github.io/ncpi-fhir-ig/package-list.json?nocache=1694812088430 (Not Found) (content in /tmp/http-log/fhir-http-2.log))
IPA Comparison: n/a
Summary: errors = 38, warn = 79, info = 27, broken links = 11
FilenameErrorsWarningsHints
Build Errors1140
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ActivityDefinition-example-study-data-dictionary-table-1101
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-ConditionInheritanceMode021
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-example-study-data-dictionary-dataset-codesystem-1021
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-example-study-data-dictionary-datatable-codesystem-1021
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-hpo222
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-loinc-answers200
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-mondo210
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-ncit210
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-ncpi011
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-ncpi-data-types011
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-omim210
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-tbd-codes310
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-v3-hgvs211
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ConceptMap-example-study-data-dictionary-conceptmap-1750
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Condition-disease-example-1110
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Condition-phenotype-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/DiagnosticReport-diagnostic-report-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/DocumentReference-drs-document-reference-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/DocumentReference-research-document-reference-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Encounter-example-encounter-study-01-patient-01000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Group-example-summary-group-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Group-ncpi-research-study-01-group-01-main000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ImplementationGuide-NCPI-FHIR-Implementation-Guide000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Observation-anvil-summary-cmg350
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Observation-anvil-summary-phs0007113100
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Observation-diagnostic-implication-1031
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Observation-example-observation-data-row-1021
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Observation-example-study-summary-gender023
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Observation-family-relationship-example-1020
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Observation-family-relationship-example-2020
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Observation-family-relationship-example-3020
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Observation-family-relationship-example-4020
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Observation-variant-example-1043
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ObservationDefinition-example-study-data-dictionary-variable-1-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ObservationDefinition-example-study-data-dictionary-variable-1-2000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ObservationDefinition-example-study-data-dictionary-variable-1-3000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ObservationDefinition-example-study-data-dictionary-variable-1-4000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ObservationDefinition-example-study-data-dictionary-variable-1-5000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Organization-organization-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Patient-ncpi-research-study-01-patient-01000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Patient-ncpi-research-study-01-patient-02000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Patient-patient-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Patient-patient-example-2000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Patient-patient-example-3000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Practitioner-practitioner-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/PractitionerRole-practitioner-role-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Questionnaire-example-questionnaire-demographics-1100
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/QuestionnaireResponse-example-questionnaire-demographics-response-1112
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ResearchStudy-ncpi-research-study-01010
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ResearchStudy-research-study-cmg010
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ResearchStudy-research-study-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ResearchStudy-research-study-phs000711010
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ResearchSubject-research-subject-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ResearchSubject-research-subject-example-2000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ResearchSubject-research-subject-example-3000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ResearchSubject-research-subject-study-01-patient-01000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ResearchSubject-research-subject-study-01-patient-02000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Specimen-ncpi-research-study-01-specimen-01110
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Specimen-specimen-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-disease000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-family-relationship000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-ncpi-drs-attachment100
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-ncpi-drs-document-reference000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-ncpi-research-document-reference000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-ncpi-research-study001
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-ncpi-specimen-task000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-phenotype000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-raw-data-observation010
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-study-data-dictionary-harmony000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-study-data-dictionary-table000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-study-data-dictionary-variable000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-study-group200
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-study-summary013
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-study-variable-summary003
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-supporting-info010
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Task-task-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Task-task-example-2000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ValueSet-condition-inheritance-vs010
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ValueSet-datatable-mappings-valueset-1041
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ValueSet-datatable-valueset-1010
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ValueSet-disease-codes010
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ValueSet-example-study-data-dictionary-case-control-vs-1030
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ValueSet-loinc-answers000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ValueSet-ncpi-vs010
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ValueSet-phenotype-codes010
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ValueSet-tbd-codes200

n/a Show Validation Information

output​/Observation-example-observation-data-row-1​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/p​/a at Line 275, column 130errorThe link 'CodeSystem-example-study-dd-dataset-codesystem-1.html' for "demographics" cannot be resolved
output​/Observation-example-observation-data-row-1​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/p​/a at Line 275, column 389errorThe link 'CodeSystem-example-study-dd-datatable-codesystem-1.html' for "CodeSystem" cannot be resolved
output​/Observation-example-study-summary-gender​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/p​/a at Line 273, column 653errorThe link 'CodeSystem-example-study-dd-datatable-codesystem-1.html' for "demographics-table" cannot be resolved
output​/Questionnaire-example-questionnaire-demographics-1​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/p​/a at Line 310, column 98errorThe link 'CodeSystem-example-study-dd-dataset-codesystem-1.html' for "Demographics CodeSystem" cannot be resolved
output​/ValueSet-datatable-mappings-valueset-1​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/ul​/li​/table​/tr​/td​/a at Line 321, column 1106errorThe link 'CodeSystem-hpo.html#hpo-HP.580010772' for "HP:0010772" cannot be resolved (valid targets: 1893 targets)
output​/ValueSet-datatable-valueset-1​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 325, column 3429errorThe link 'CodeSystem-hpo.html#hpo-HP.580010772' for "HP:0010772" cannot be resolved (valid targets: 1893 targets)
output​/example_raw_data​.html​#​/html​/body​/div​/div​/div​/div​/div​/table​/tbody​/tr​/td​/a at Line 256, column 114errorThe link 'CodeSystem-example-study-dd-dataset-codesystem-1.html' for "dataset CodeSystem" cannot be resolved
output​/example_raw_data​.html​#​/html​/body​/div​/div​/div​/div​/div​/p​/a at Line 266, column 329errorThe link 'ObservationDefinition-example-study-dd-variable-1-1.json.html' for "subjectid" cannot be resolved
output​/example_raw_data​.html​#​/html​/body​/div​/div​/div​/div​/div​/p​/a at Line 266, column 475errorThe link 'ObservationDefinition-example-study-dd-variable-1-2.json.html' for "gender" cannot be resolved
output​/example_raw_data​.html​#​/html​/body​/div​/div​/div​/div​/div​/p​/a at Line 281, column 569errorThe link 'CodeSystem-example-study-dd-dataset-codesystem-1.html' for "demographics" cannot be resolved
output​/example_raw_data​.html​#​/html​/body​/div​/div​/div​/div​/div​/p​/a at Line 281, column 868errorThe link 'CodeSystem-example-study-dd-datatable-codesystem-1.html' for "CodeSystem" cannot be resolved
1warningThe HTML fragment 'ip-statements.xhtml' is not included anywhere in the produced implementation guide
2warningAn HTML fragment from the set [cross-version-analysis.xhtml, cross-version-analysis-inline.xhtml] is not included anywhere in the produced implementation guide
3warningAn HTML fragment from the set [dependency-table.xhtml, dependency-table-short.xhtml] is not included anywhere in the produced implementation guide
4warningThe HTML fragment 'globals-table.xhtml' is not included anywhere in the produced implementation guide

fsh-generated/resources/ActivityDefinition-example-study-data-dictionary-table-1.json Show Validation Information (1)

PathSeverityMessage
ActivityDefinition​.topic[0]​.coding[0] (l1​/c725)informationCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
ActivityDefinition​.code​.coding[0] (l1​/c912)errorThe CodeSystem https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/example-study-data-dictionary-dataset-codesystem-1 is unknown (from Tx-Server) for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/example-study-data-dictionary-dataset-codesystem-1#demographics' (see Tx log)

fsh-generated/resources/CodeSystem-ConditionInheritanceMode.json Show Validation Information (1)

PathSeverityMessage
CodeSysteminformationCodeSystems SHOULD have a stated value for the caseSensitive element so that users know the status and meaning of the code system clearly
CodeSystem (l1/c2709)warningPublished code systems SHOULD conform to the ShareableCodeSystem profile, which says that the element CodeSystem.experimental is mandatory, but it is not present
CodeSystem (l1/c2709)warningPublished code systems SHOULD conform to the ShareableCodeSystem profile, which says that the element CodeSystem.caseSensitive is mandatory, but it is not present

fsh-generated/resources/CodeSystem-example-study-data-dictionary-dataset-codesystem-1.json Show Validation Information (1)

PathSeverityMessage
CodeSysteminformationCodeSystems SHOULD have a stated value for the caseSensitive element so that users know the status and meaning of the code system clearly
CodeSystem (l1/c870)warningPublished code systems SHOULD conform to the ShareableCodeSystem profile, which says that the element CodeSystem.experimental is mandatory, but it is not present
CodeSystem (l1/c870)warningPublished code systems SHOULD conform to the ShareableCodeSystem profile, which says that the element CodeSystem.caseSensitive is mandatory, but it is not present

fsh-generated/resources/CodeSystem-example-study-data-dictionary-datatable-codesystem-1.json Show Validation Information (1)

PathSeverityMessage
CodeSysteminformationCodeSystems SHOULD have a stated value for the caseSensitive element so that users know the status and meaning of the code system clearly
CodeSystem (l1/c1176)warningPublished code systems SHOULD conform to the ShareableCodeSystem profile, which says that the element CodeSystem.experimental is mandatory, but it is not present
CodeSystem (l1/c1176)warningPublished code systems SHOULD conform to the ShareableCodeSystem profile, which says that the element CodeSystem.caseSensitive is mandatory, but it is not present

fsh-generated/resources/CodeSystem-hpo.json Show Validation Information (1)

PathSeverityMessage
CodeSystem​.where(url = 'http:​/​/purl​.obolibrary​.org​/obo​/hp​.owl')errorConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-hpo.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/hpo) does not match the URL (http://purl.obolibrary.org/obo/hp.owl)
CodeSysteminformationCodeSystems SHOULD have a stated value for the caseSensitive element so that users know the status and meaning of the code system clearly
CodeSystem.count (l1/c965)warningNew Rule: The code system is a fragment/example, but the number of concepts (1,880) exceeds or matches the stated total number (1,880)
CodeSysteminformationReview the All Codes Value Set - incomplete CodeSystems generally should not have an all codes value set specified
CodeSystem (l1/c107601)warningPublished code systems SHOULD conform to the ShareableCodeSystem profile, which says that the element CodeSystem.caseSensitive is mandatory, but it is not present
fsh-generated/resources/CodeSystem-hpoerrorURL Mismatch https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/hpo vs http://purl.obolibrary.org/obo/hp.owl

fsh-generated/resources/CodeSystem-loinc-answers.json Show Validation Information (1)

PathSeverityMessage
CodeSystem​.where(url = 'ncpi:loinc-answers')errorConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-loinc-answers.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/loinc-answers) does not match the URL (ncpi:loinc-answers)
fsh-generated​/resources​/CodeSystem-loinc-answerserrorURL Mismatch https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/loinc-answers vs ncpi:loinc-answers

fsh-generated/resources/CodeSystem-mondo.json Show Validation Information (1)

PathSeverityMessage
CodeSystem​.where(url = 'http:​/​/purl​.obolibrary​.org​/obo​/mondo​.owl')errorConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-mondo.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/mondo) does not match the URL (http://purl.obolibrary.org/obo/mondo.owl)
CodeSystem.count (l1/c817)warningNew Rule: The code system is a fragment/example, but the number of concepts (3) exceeds or matches the stated total number (3)
fsh-generated​/resources​/CodeSystem-mondoerrorURL Mismatch https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/mondo vs http://purl.obolibrary.org/obo/mondo.owl

fsh-generated/resources/CodeSystem-ncit.json Show Validation Information (1)

PathSeverityMessage
CodeSystem​.where(url = 'http:​/​/purl​.obolibrary​.org​/obo​/ncit​.owl')errorConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-ncit.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncit) does not match the URL (http://purl.obolibrary.org/obo/ncit.owl)
CodeSystem.count (l1/c849)warningNew Rule: The code system is a fragment/example, but the number of concepts (3) exceeds or matches the stated total number (3)
fsh-generated/resources/CodeSystem-nciterrorURL Mismatch https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncit vs http://purl.obolibrary.org/obo/ncit.owl

fsh-generated/resources/CodeSystem-ncpi.json Show Validation Information (1)

PathSeverityMessage
CodeSysteminformationCodeSystems SHOULD have a stated value for the caseSensitive element so that users know the status and meaning of the code system clearly
CodeSystem (l1/c1890)warningPublished code systems SHOULD conform to the ShareableCodeSystem profile, which says that the element CodeSystem.caseSensitive is mandatory, but it is not present

fsh-generated/resources/CodeSystem-ncpi-data-types.json Show Validation Information (1)

PathSeverityMessage
CodeSysteminformationCodeSystems SHOULD have a stated value for the caseSensitive element so that users know the status and meaning of the code system clearly
CodeSystem (l1/c882)warningPublished code systems SHOULD conform to the ShareableCodeSystem profile, which says that the element CodeSystem.caseSensitive is mandatory, but it is not present

fsh-generated/resources/CodeSystem-omim.json Show Validation Information (1)

PathSeverityMessage
CodeSystem​.where(url = 'https:​/​/omim​.org​/')errorConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-omim.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/omim) does not match the URL (https://omim.org/)
CodeSystem.count (l1/c729)warningNew Rule: The code system is a fragment/example, but the number of concepts (498) exceeds or matches the stated total number (497)
fsh-generated/resources/CodeSystem-omimerrorURL Mismatch https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/omim vs https://omim.org/

fsh-generated/resources/CodeSystem-tbd-codes.json Show Validation Information (1)

PathSeverityMessage
CodeSystem​.where(url = 'http:​/​/hl7​.org​/fhir​/uv​/genomics-reporting​/CodeSystem​/tbd-codes')errorConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-tbd-codes.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/tbd-codes) does not match the URL (http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes)
CodeSystemwarningHL7 Defined CodeSystems SHOULD have a stated value for the caseSensitive element so that users know the status and meaning of the code system clearly
CodeSystem (l1/c3856)errorPublished code systems SHALL conform to the ShareableCodeSystem profile, which says that the element CodeSystem.caseSensitive is mandatory, but it is not present
fsh-generated​/resources​/CodeSystem-tbd-codeserrorURL Mismatch https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/tbd-codes vs http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes

fsh-generated/resources/CodeSystem-v3-hgvs.json Show Validation Information (1)

PathSeverityMessage
CodeSystem​.where(url = 'http:​/​/varnomen​.hgvs​.org')errorConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-v3-hgvs.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/v3-hgvs) does not match the URL (http://varnomen.hgvs.org)
CodeSysteminformationCodeSystems SHOULD have a stated value for the caseSensitive element so that users know the status and meaning of the code system clearly
CodeSystem (l1/c4889)warningPublished code systems SHOULD conform to the ShareableCodeSystem profile, which says that the element CodeSystem.caseSensitive is mandatory, but it is not present
fsh-generated​/resources​/CodeSystem-v3-hgvserrorURL Mismatch https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/v3-hgvs vs http://varnomen.hgvs.org

fsh-generated/resources/ConceptMap-example-study-data-dictionary-conceptmap-1.json Show Validation Information (1)

PathSeverityMessage
ConceptMap.group[2].target (l1/c2523)warningTarget Code System http://purl.obolibrary.org/obo/hp.owl doesn't have all content (content = fragment), so the target codes cannot be checked
ConceptMap (l1/c3002)warningPublished concept maps SHOULD conform to the ShareableConceptMap profile, which says that the element ConceptMap.title is mandatory, but it is not present
ConceptMap (l1/c3002)warningPublished concept maps SHOULD conform to the ShareableConceptMap profile, which says that the element ConceptMap.name should be present, but it is not
ConceptMap (l1/c3002)warningPublished concept maps SHOULD conform to the ShareableConceptMap profile, which says that the element ConceptMap.experimental is mandatory, but it is not present
ConceptMap (l1/c3002)warningPublished concept maps SHOULD conform to the ShareableConceptMap profile, which says that the element ConceptMap.description is mandatory, but it is not present
ConceptMap​.group[0]​.element[0]​.target[0]​.code (l1​/c1214)errorNew Rule: The code 'C2348584' in the system https://uts.nlm.nih.gov/uts/umls is not valid in the value set 'https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/datatable-mappings-valueset-1'
ConceptMap​.group[0]​.element[1]​.target[0]​.code (l1​/c1347)errorNew Rule: The code 'C0079399' in the system https://uts.nlm.nih.gov/uts/umls is not valid in the value set 'https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/datatable-mappings-valueset-1'
ConceptMap​.group[0]​.element[2]​.target[0]​.code (l1​/c1500)errorNew Rule: The code 'C168843' in the system https://uts.nlm.nih.gov/uts/umls is not valid in the value set 'https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/datatable-mappings-valueset-1'
ConceptMap​.group[0]​.element[3]​.target[0]​.code (l1​/c1661)errorNew Rule: The code 'C1305855' in the system https://uts.nlm.nih.gov/uts/umls is not valid in the value set 'https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/datatable-mappings-valueset-1'
ConceptMap​.group[0]​.element[4]​.target[0]​.code (l1​/c1807)errorNew Rule: The code 'C0872128' in the system https://uts.nlm.nih.gov/uts/umls is not valid in the value set 'https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/datatable-mappings-valueset-1'
ConceptMap​.group[3]​.element[0]​.target[0]​.code (l1​/c2800)errorNew Rule: The code 'MONDO:0017705' in the system http://purl.obolibrary.org/obo/mondo.owl is not valid in the value set 'https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/datatable-mappings-valueset-1'
ConceptMap​.group[3]​.element[0]​.target[1]​.code (l1​/c2907)errorNew Rule: The code 'MONDO:0007130' in the system http://purl.obolibrary.org/obo/mondo.owl is not valid in the value set 'https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/datatable-mappings-valueset-1'

fsh-generated/resources/Condition-disease-example-1.json Show Validation Information (1)

PathSeverityMessage
Condition.code.coding[0] (l42/c8)errorUnknown Code 'NCIT:Neuroblastoma' in the system 'http://purl.obolibrary.org/obo/ncit.owl|0.2.0' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment
Condition.code.coding[0] (l42/c8)warningUnknown Code 'NCIT:Neuroblastoma' in the system 'http://purl.obolibrary.org/obo/ncit.owl|0.2.0' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment for 'http://purl.obolibrary.org/obo/ncit.owl#NCIT:Neuroblastoma'

fsh-generated/resources/Condition-phenotype-example-1.json Show Validation Information (1)


fsh-generated/resources/DiagnosticReport-diagnostic-report-1.json Show Validation Information (1)


fsh-generated/resources/DocumentReference-drs-document-reference-example-1.json Show Validation Information (1)


fsh-generated/resources/DocumentReference-research-document-reference-example-1.json Show Validation Information (1)


fsh-generated/resources/Encounter-example-encounter-study-01-patient-01.json Show Validation Information (1)


fsh-generated/resources/Group-example-summary-group-1.json Show Validation Information (1)


fsh-generated/resources/Group-ncpi-research-study-01-group-01-main.json Show Validation Information (1)


fsh-generated/resources/ImplementationGuide-NCPI-FHIR-Implementation-Guide.json Show Validation Information (0)


fsh-generated/resources/Observation-anvil-summary-cmg.json Show Validation Information (1)

PathSeverityMessage
Observation.code.coding[0] (l7/c8)errorWrong Display Name 'Variable Summary' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Summary - should be 'Summary Data' (for the language(s) '--') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Summary'
Observation​.component[0]​.code​.coding[0] (l23​/c12)warningA code with no system has no defined meaning. A system should be provided
Observation​.component[1]​.code​.coding[0] (l34​/c12)errorWrong Display Name 'Number of Samples' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#SampleCount - should be 'Number of samples that are part of this study' (for the language(s) '--') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#SampleCount'
Observation​.component[2]​.code​.coding[0] (l46​/c12)errorWrong Display Name 'Number of Participants' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Participant - should be 'Number of participants that are part of this study' (for the language(s) '--') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Participant'
Observation​.component[3]​.code​.coding[0] (l58​/c12)warningA code with no system has no defined meaning. A system should be provided
Observation (l1/c2)warningAll observations should have a subject
Observation (l1/c2)warningAll observations should have a performer
Observation (l1/c2)warningAll observations should have an effectiveDateTime or an effectivePeriod

fsh-generated/resources/Observation-anvil-summary-phs000711.json Show Validation Information (1)

PathSeverityMessage
Observation.code.coding[0] (l7/c8)errorWrong Display Name 'Variable Summary' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Summary - should be 'Summary Data' (for the language(s) '--') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Summary'
Observation​.component[0]​.code​.coding[0] (l23​/c12)errorWrong Display Name 'Number of Samples' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#SampleCount - should be 'Number of samples that are part of this study' (for the language(s) '--') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#SampleCount'
Observation​.component[1]​.code​.coding[0] (l35​/c12)errorWrong Display Name 'Number of Participants' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Participant - should be 'Number of participants that are part of this study' (for the language(s) '--') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Participant'
Observation​.component[2]​.code​.coding[0] (l47​/c12)warningA code with no system has no defined meaning. A system should be provided
Observation​.component[3]​.code​.coding[0] (l58​/c12)warningA code with no system has no defined meaning. A system should be provided
Observation​.component[4]​.code​.coding[0] (l69​/c12)warningA code with no system has no defined meaning. A system should be provided
Observation​.component[5]​.code​.coding[0] (l80​/c12)warningA code with no system has no defined meaning. A system should be provided
Observation​.component[6]​.code​.coding[0] (l91​/c12)warningA code with no system has no defined meaning. A system should be provided
Observation​.component[7]​.code​.coding[0] (l101​/c12)warningA code with no system has no defined meaning. A system should be provided
Observation​.component[8]​.code​.coding[0] (l111​/c12)warningA code with no system has no defined meaning. A system should be provided
Observation (l1/c2)warningAll observations should have a subject
Observation (l1/c2)warningAll observations should have a performer
Observation (l1/c2)warningAll observations should have an effectiveDateTime or an effectivePeriod

fsh-generated/resources/Observation-diagnostic-implication-1.json Show Validation Information (1)

PathSeverityMessage
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l42​/c12)informationCode System URI 'http://fhir.ncpi-project-forge.io/ValueSet/condition-inheritance-vs' is unknown so the code cannot be validated
Observation (l1/c2)warningAll observations should have a subject
Observation (l1/c2)warningAll observations should have a performer
Observation (l1/c2)warningAll observations should have an effectiveDateTime or an effectivePeriod

fsh-generated/resources/Observation-example-observation-data-row-1.json Show Validation Information (1)

PathSeverityMessage
Observation​.component[3]​.value​.ofType(CodeableConcept)​.coding[0] (l77​/c12)informationCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
Observation (l1/c2)warningAll observations should have a performer
Observation (l1/c2)warningAll observations should have an effectiveDateTime or an effectivePeriod

fsh-generated/resources/Observation-example-study-summary-gender.json Show Validation Information (1)

PathSeverityMessage
Observation.code.coding[0] (l12/c8)informationCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
Observation​.value​.ofType(CodeableConcept)​.coding[0] (l21​/c8)informationCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
Observation​.component[2]​.code​.coding[0] (l66​/c12)informationCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
Observation (l1/c2)warningAll observations should have a performer
Observation (l1/c2)warningAll observations should have an effectiveDateTime or an effectivePeriod

fsh-generated/resources/Observation-family-relationship-example-1.json Show Validation Information (1)

PathSeverityMessage
Observation (l1/c2)warningAll observations should have a performer
Observation (l1/c2)warningAll observations should have an effectiveDateTime or an effectivePeriod

fsh-generated/resources/Observation-family-relationship-example-2.json Show Validation Information (1)

PathSeverityMessage
Observation (l1/c2)warningAll observations should have a performer
Observation (l1/c2)warningAll observations should have an effectiveDateTime or an effectivePeriod

fsh-generated/resources/Observation-family-relationship-example-3.json Show Validation Information (1)

PathSeverityMessage
Observation (l1/c2)warningAll observations should have a performer
Observation (l1/c2)warningAll observations should have an effectiveDateTime or an effectivePeriod

fsh-generated/resources/Observation-family-relationship-example-4.json Show Validation Information (1)

PathSeverityMessage
Observation (l1/c2)warningAll observations should have a performer
Observation (l1/c2)warningAll observations should have an effectiveDateTime or an effectivePeriod

fsh-generated/resources/Observation-variant-example-1.json Show Validation Information (1)

PathSeverityMessage
Observation​.component[0]​.value​.ofType(CodeableConcept)​.coding[0] (l59​/c12)informationCode System URI 'https://www.ncbi.nlm.nih.gov/gene' is unknown so the code cannot be validated
Observation​.component[1]​.value​.ofType(CodeableConcept)​.coding[0] (l79​/c12)informationCode System URI 'http://fhir.ncpi-project-forge.io/ValueSet/loinc-answers' is unknown so the code cannot be validated
Observation​.component[7]​.value​.ofType(CodeableConcept)​.coding[0] (l182​/c12)informationThe definition for the Code System with URI 'http://www.ncbi.nlm.nih.gov/refseq' doesnt provide any codes so the code cannot be validated
Observation​.component[8]​.value​.ofType(CodeableConcept)​.coding[0] (l202​/c12)warningError from server: HGVS is not supported at this time (see Tx log)
Observation (l1/c2)warningAll observations should have a subject
Observation (l1/c2)warningAll observations should have a performer
Observation (l1/c2)warningAll observations should have an effectiveDateTime or an effectivePeriod

fsh-generated/resources/ObservationDefinition-example-study-data-dictionary-variable-1-1.json Show Validation Information (1)


fsh-generated/resources/ObservationDefinition-example-study-data-dictionary-variable-1-2.json Show Validation Information (1)


fsh-generated/resources/ObservationDefinition-example-study-data-dictionary-variable-1-3.json Show Validation Information (1)


fsh-generated/resources/ObservationDefinition-example-study-data-dictionary-variable-1-4.json Show Validation Information (1)


fsh-generated/resources/ObservationDefinition-example-study-data-dictionary-variable-1-5.json Show Validation Information (1)


fsh-generated/resources/Organization-organization-example-1.json Show Validation Information (1)


fsh-generated/resources/Patient-ncpi-research-study-01-patient-01.json Show Validation Information (1)


fsh-generated/resources/Patient-ncpi-research-study-01-patient-02.json Show Validation Information (1)


fsh-generated/resources/Patient-patient-example-1.json Show Validation Information (1)


fsh-generated/resources/Patient-patient-example-2.json Show Validation Information (1)


fsh-generated/resources/Patient-patient-example-3.json Show Validation Information (1)


fsh-generated/resources/Practitioner-practitioner-example-1.json Show Validation Information (1)


fsh-generated/resources/PractitionerRole-practitioner-role-example-1.json Show Validation Information (1)


fsh-generated/resources/Questionnaire-example-questionnaire-demographics-1.json Show Validation Information (1)

PathSeverityMessage
Questionnaire.urlerrorResource id/url mismatch: example-questionnaire-demographics-1/https://nih-ncpi.github.io/ncpi-fhir-ig/data-dictionary/study-name/demographics

fsh-generated/resources/QuestionnaireResponse-example-questionnaire-demographics-response-1.json Show Validation Information (1)

PathSeverityMessage
QuestionnaireResponse.subject (l6/c4)errorUnable to resolve resource with reference 'example-sum-patient-1'
QuestionnaireResponse​.item[3]​.answer[0]​.value​.ofType(Coding) (l47​/c12)informationCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
QuestionnaireResponse​.item[1]​.answer[0] (l24​/c34)informationCannot validate string answer option because no option list is provided
QuestionnaireResponse​.item[3]​.answer[0] (l47​/c12)warningThe code provided C99269 cannot be validated in the options value set (Case/Control Vars for 'status' categoricals) in the questionnaire because the system https://uts.nlm.nih.gov/uts/umls is unknown

fsh-generated/resources/ResearchStudy-ncpi-research-study-01.json Show Validation Information (1)

PathSeverityMessage
ResearchStudy​.primaryPurposeType​.coding[0] (l24​/c8)warningA code with no system has no defined meaning. A system should be provided

fsh-generated/resources/ResearchStudy-research-study-cmg.json Show Validation Information (1)

PathSeverityMessage
ResearchStudy​.primaryPurposeType​.coding[0] (l8​/c8)warningA code with no system has no defined meaning. A system should be provided

fsh-generated/resources/ResearchStudy-research-study-example-1.json Show Validation Information (1)


fsh-generated/resources/ResearchStudy-research-study-phs000711.json Show Validation Information (1)

PathSeverityMessage
ResearchStudy​.primaryPurposeType​.coding[0] (l8​/c8)warningA code with no system has no defined meaning. A system should be provided

fsh-generated/resources/ResearchSubject-research-subject-example-1.json Show Validation Information (1)


fsh-generated/resources/ResearchSubject-research-subject-example-2.json Show Validation Information (1)


fsh-generated/resources/ResearchSubject-research-subject-example-3.json Show Validation Information (1)


fsh-generated/resources/ResearchSubject-research-subject-study-01-patient-01.json Show Validation Information (1)


fsh-generated/resources/ResearchSubject-research-subject-study-01-patient-02.json Show Validation Information (1)


fsh-generated/resources/Specimen-ncpi-research-study-01-specimen-01.json Show Validation Information (1)

PathSeverityMessage
Specimen.type.coding[0] (l7/c8)errorUnknown Code 'C17610' in the system 'http://purl.obolibrary.org/obo/ncit.owl|0.2.0' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment
Specimen.type.coding[0] (l7/c8)warningUnknown Code 'C17610' in the system 'http://purl.obolibrary.org/obo/ncit.owl|0.2.0' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment for 'http://purl.obolibrary.org/obo/ncit.owl#C17610'

fsh-generated/resources/Specimen-specimen-example-1.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-disease.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-family-relationship.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-ncpi-drs-attachment.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.snapshot​.element[0]​.constraint[2] (l1​/c2650)errorError in constraint 'must-be-drs-uri' with expression '$this.url.matches('^drs://.*')': Error evaluating FHIRPath expression: The function matches can only be used on string, uri, code, id but found [http://hl7.org/fhir/StructureDefinition/url] (@char 1)

fsh-generated/resources/StructureDefinition-ncpi-drs-document-reference.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-ncpi-research-document-reference.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-ncpi-research-study.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.snapshot​.element[19]​.pattern​.ofType(Coding)informationThe repeating element has a pattern. The pattern will apply to all the repeats (this has not been clear to all users)

fsh-generated/resources/StructureDefinition-ncpi-specimen-task.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-phenotype.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-raw-data-observation.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.where(url = 'https:​/​/nih-ncpi​.github​.io​/ncpi-fhir-ig​/StructureDefinition​/raw-data-observation')warningThe Implementation Guide contains no examples for this profile

fsh-generated/resources/StructureDefinition-study-data-dictionary-harmony.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-study-data-dictionary-table.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-study-data-dictionary-variable.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-study-group.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.snapshot​.element[13]​.pattern​.ofType(CodeableConcept)​.coding[0] (l1​/c21038)errorUnable to find code 44807982 in http://snomed.info/sct (version http://snomed.info/sct/900000000000207008/version/20230901); Unknown Code '44807982' in the system 'http://snomed.info/sct|http://snomed.info/sct/900000000000207008/version/20230901'; The provided code 'http://snomed.info/sct#44807982' is not in the value set 'http://hl7.org/fhir/ValueSet/@all' (from Tx-Server) for 'http://snomed.info/sct#44807982' (see Tx log)
StructureDefinition​.differential​.element[3]​.pattern​.ofType(CodeableConcept)​.coding[0] (l1​/c42066)errorUnable to find code 44807982 in http://snomed.info/sct (version http://snomed.info/sct/900000000000207008/version/20230901); Unknown Code '44807982' in the system 'http://snomed.info/sct|http://snomed.info/sct/900000000000207008/version/20230901'; The provided code 'http://snomed.info/sct#44807982' is not in the value set 'http://hl7.org/fhir/ValueSet/@all' (from Tx-Server) for 'http://snomed.info/sct#44807982' (see Tx log)

fsh-generated/resources/StructureDefinition-study-summary.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.snapshot​.element[17]​.pattern​.ofType(Coding) (l1​/c29132)informationCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
StructureDefinition​.differential​.element[1]​.pattern​.ofType(Coding) (l1​/c84058)informationCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
StructureDefinition​.snapshot​.element[17]​.pattern​.ofType(Coding)informationThe repeating element has a pattern. The pattern will apply to all the repeats (this has not been clear to all users)
StructureDefinition​.where(url = 'https:​/​/nih-ncpi​.github​.io​/ncpi-fhir-ig​/StructureDefinition​/study-summary')warningThe Implementation Guide contains no examples for this profile

fsh-generated/resources/StructureDefinition-study-variable-summary.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.snapshot​.element[17]​.pattern​.ofType(Coding) (l1​/c29139)informationCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
StructureDefinition​.differential​.element[1]​.pattern​.ofType(Coding) (l1​/c85561)informationCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
StructureDefinition​.snapshot​.element[17]​.pattern​.ofType(Coding)informationThe repeating element has a pattern. The pattern will apply to all the repeats (this has not been clear to all users)

fsh-generated/resources/StructureDefinition-supporting-info.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition.context[0]warningReview the extension type: extensions should not have a context of Element unless it's really intended that they can be used anywhere

fsh-generated/resources/Task-task-example-1.json Show Validation Information (1)


fsh-generated/resources/Task-task-example-2.json Show Validation Information (1)


fsh-generated/resources/ValueSet-condition-inheritance-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c947)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-datatable-mappings-valueset-1.json Show Validation Information (1)

PathSeverityMessage
ValueSet.compose.include[0]warningUnknown System 'https://uts.nlm.nih.gov/uts/umls' specified, so Concepts and Filters can't be checked (Details: The CodeSystem https://uts.nlm.nih.gov/uts/umls is unknown (from Tx-Server))
ValueSet.compose.include[2].concept[0]informationUnknown Code 'HP:0010772' in the system 'http://purl.obolibrary.org/obo/hp.owl|0.2.0' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment
ValueSet.compose.include[3]warningUnknown System 'http://purl.obolibrary.org/obo/mondo.owl' specified, so Concepts and Filters can't be checked (Details: The CodeSystem http://purl.obolibrary.org/obo/mondo.owl is unknown (from Tx-Server))
ValueSet (l1/c1657)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present
ValueSet​.where(id = 'datatable-mappings-valueset-1')warningError from server: Unable to provide support for code system https://uts.nlm.nih.gov/uts/umls (see Tx log)

fsh-generated/resources/ValueSet-datatable-valueset-1.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c803)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-disease-codes.json Show Validation Information (1)

PathSeverityMessage
ValueSet.where(id = 'disease-codes')warningError from server: Unable to provide support for code system http://purl.obolibrary.org/obo/mondo.owl (see Tx log)

fsh-generated/resources/ValueSet-example-study-data-dictionary-case-control-vs-1.json Show Validation Information (1)

PathSeverityMessage
ValueSet.compose.include[0]warningUnknown System 'https://uts.nlm.nih.gov/uts/umls' specified, so Concepts and Filters can't be checked (Details: Code System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated)
ValueSet (l1/c963)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present
ValueSet​.where(id = 'example-study-data-dictionary-case-control-vs-1')warningError from server: Unable to provide support for code system https://uts.nlm.nih.gov/uts/umls (see Tx log)

fsh-generated/resources/ValueSet-loinc-answers.json Show Validation Information (1)


fsh-generated/resources/ValueSet-ncpi-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c801)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-phenotype-codes.json Show Validation Information (1)

PathSeverityMessage
ValueSet.where(id = 'phenotype-codes')warningError from server: Unable to provide support for code system http://purl.obolibrary.org/obo/hp.owl (see Tx log)

fsh-generated/resources/ValueSet-tbd-codes.json Show Validation Information (1)

PathSeverityMessage
ValueSet​.where(url = 'http:​/​/hl7​.org​/fhir​/uv​/genomics-reporting​/ValueSet​/tbd-codes')errorConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ValueSet-tbd-codes.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/tbd-codes) does not match the URL (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/tbd-codes)
fsh-generated​/resources​/ValueSet-tbd-codeserrorURL Mismatch https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/tbd-codes vs http://hl7.org/fhir/uv/genomics-reporting/ValueSet/tbd-codes

Suppressed Messages (Warnings, hints, broken links)

No suppressed messsages

Errors sorted by type


All_observations_should_have_a_performer

fsh-generated/resources/Observation-anvil-summary-cmg.jsonAll observations should have a performer
fsh-generated/resources/Observation-anvil-summary-phs000711.jsonAll observations should have a performer
fsh-generated/resources/Observation-diagnostic-implication-1.jsonAll observations should have a performer
fsh-generated/resources/Observation-example-observation-data-row-1.jsonAll observations should have a performer
fsh-generated/resources/Observation-example-study-summary-gender.jsonAll observations should have a performer
fsh-generated/resources/Observation-family-relationship-example-1.jsonAll observations should have a performer
fsh-generated/resources/Observation-family-relationship-example-2.jsonAll observations should have a performer
fsh-generated/resources/Observation-family-relationship-example-3.jsonAll observations should have a performer
fsh-generated/resources/Observation-family-relationship-example-4.jsonAll observations should have a performer
fsh-generated/resources/Observation-variant-example-1.jsonAll observations should have a performer

All_observations_should_have_a_subject

fsh-generated/resources/Observation-anvil-summary-cmg.jsonAll observations should have a subject
fsh-generated/resources/Observation-anvil-summary-phs000711.jsonAll observations should have a subject
fsh-generated/resources/Observation-diagnostic-implication-1.jsonAll observations should have a subject
fsh-generated/resources/Observation-variant-example-1.jsonAll observations should have a subject

All_observations_should_have_an_effectiveDateTime_or_an_effectivePeriod

fsh-generated/resources/Observation-anvil-summary-cmg.jsonAll observations should have an effectiveDateTime or an effectivePeriod
fsh-generated/resources/Observation-anvil-summary-phs000711.jsonAll observations should have an effectiveDateTime or an effectivePeriod
fsh-generated/resources/Observation-diagnostic-implication-1.jsonAll observations should have an effectiveDateTime or an effectivePeriod
fsh-generated/resources/Observation-example-observation-data-row-1.jsonAll observations should have an effectiveDateTime or an effectivePeriod
fsh-generated/resources/Observation-example-study-summary-gender.jsonAll observations should have an effectiveDateTime or an effectivePeriod
fsh-generated/resources/Observation-family-relationship-example-1.jsonAll observations should have an effectiveDateTime or an effectivePeriod
fsh-generated/resources/Observation-family-relationship-example-2.jsonAll observations should have an effectiveDateTime or an effectivePeriod
fsh-generated/resources/Observation-family-relationship-example-3.jsonAll observations should have an effectiveDateTime or an effectivePeriod
fsh-generated/resources/Observation-family-relationship-example-4.jsonAll observations should have an effectiveDateTime or an effectivePeriod
fsh-generated/resources/Observation-variant-example-1.jsonAll observations should have an effectiveDateTime or an effectivePeriod

CODESYSTEM_CS_COUNT_FRAGMENT_WRONG

fsh-generated/resources/CodeSystem-hpo.jsonThe code system is a fragment/example, but the number of concepts (1,880) exceeds or matches the stated total number (1,880)
fsh-generated/resources/CodeSystem-mondo.jsonThe code system is a fragment/example, but the number of concepts (3) exceeds or matches the stated total number (3)
fsh-generated/resources/CodeSystem-ncit.jsonThe code system is a fragment/example, but the number of concepts (3) exceeds or matches the stated total number (3)
fsh-generated/resources/CodeSystem-omim.jsonThe code system is a fragment/example, but the number of concepts (498) exceeds or matches the stated total number (497)

CODESYSTEM_SHAREABLE_MISSING

fsh-generated/resources/CodeSystem-ConditionInheritanceMode.jsonPublished code systems SHOULD conform to the ShareableCodeSystem profile, which says that the element CodeSystem.experimental is mandatory, but it is not present
fsh-generated/resources/CodeSystem-ConditionInheritanceMode.jsonPublished code systems SHOULD conform to the ShareableCodeSystem profile, which says that the element CodeSystem.caseSensitive is mandatory, but it is not present
fsh-generated/resources/CodeSystem-example-study-data-dictionary-dataset-codesystem-1.jsonPublished code systems SHOULD conform to the ShareableCodeSystem profile, which says that the element CodeSystem.experimental is mandatory, but it is not present
fsh-generated/resources/CodeSystem-example-study-data-dictionary-dataset-codesystem-1.jsonPublished code systems SHOULD conform to the ShareableCodeSystem profile, which says that the element CodeSystem.caseSensitive is mandatory, but it is not present
fsh-generated/resources/CodeSystem-example-study-data-dictionary-datatable-codesystem-1.jsonPublished code systems SHOULD conform to the ShareableCodeSystem profile, which says that the element CodeSystem.experimental is mandatory, but it is not present
fsh-generated/resources/CodeSystem-example-study-data-dictionary-datatable-codesystem-1.jsonPublished code systems SHOULD conform to the ShareableCodeSystem profile, which says that the element CodeSystem.caseSensitive is mandatory, but it is not present
fsh-generated/resources/CodeSystem-hpo.jsonPublished code systems SHOULD conform to the ShareableCodeSystem profile, which says that the element CodeSystem.caseSensitive is mandatory, but it is not present
fsh-generated/resources/CodeSystem-ncpi.jsonPublished code systems SHOULD conform to the ShareableCodeSystem profile, which says that the element CodeSystem.caseSensitive is mandatory, but it is not present
fsh-generated/resources/CodeSystem-ncpi-data-types.jsonPublished code systems SHOULD conform to the ShareableCodeSystem profile, which says that the element CodeSystem.caseSensitive is mandatory, but it is not present
fsh-generated/resources/CodeSystem-v3-hgvs.jsonPublished code systems SHOULD conform to the ShareableCodeSystem profile, which says that the element CodeSystem.caseSensitive is mandatory, but it is not present

CODESYSTEM_SHAREABLE_MISSING_HL7

fsh-generated/resources/CodeSystem-tbd-codes.jsonPublished code systems SHALL conform to the ShareableCodeSystem profile, which says that the element CodeSystem.caseSensitive is mandatory, but it is not present

CONCEPTMAP_GROUP_TARGET_INCOMPLETE

fsh-generated/resources/ConceptMap-example-study-data-dictionary-conceptmap-1.jsonTarget Code System http://purl.obolibrary.org/obo/hp.owl doesn't have all content (content = fragment), so the target codes cannot be checked

CONCEPTMAP_SHAREABLE_EXTRA_MISSING

fsh-generated/resources/ConceptMap-example-study-data-dictionary-conceptmap-1.jsonPublished concept maps SHOULD conform to the ShareableConceptMap profile, which says that the element ConceptMap.name should be present, but it is not

CONCEPTMAP_SHAREABLE_MISSING

fsh-generated/resources/ConceptMap-example-study-data-dictionary-conceptmap-1.jsonPublished concept maps SHOULD conform to the ShareableConceptMap profile, which says that the element ConceptMap.title is mandatory, but it is not present
fsh-generated/resources/ConceptMap-example-study-data-dictionary-conceptmap-1.jsonPublished concept maps SHOULD conform to the ShareableConceptMap profile, which says that the element ConceptMap.experimental is mandatory, but it is not present
fsh-generated/resources/ConceptMap-example-study-data-dictionary-conceptmap-1.jsonPublished concept maps SHOULD conform to the ShareableConceptMap profile, which says that the element ConceptMap.description is mandatory, but it is not present

CONCEPTMAP_VS_INVALID_CONCEPT_CODE

fsh-generated/resources/ConceptMap-example-study-data-dictionary-conceptmap-1.jsonThe code 'C2348584' in the system https://uts.nlm.nih.gov/uts/umls is not valid in the value set 'https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/datatable-mappings-valueset-1'
fsh-generated/resources/ConceptMap-example-study-data-dictionary-conceptmap-1.jsonThe code 'C0079399' in the system https://uts.nlm.nih.gov/uts/umls is not valid in the value set 'https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/datatable-mappings-valueset-1'
fsh-generated/resources/ConceptMap-example-study-data-dictionary-conceptmap-1.jsonThe code 'C168843' in the system https://uts.nlm.nih.gov/uts/umls is not valid in the value set 'https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/datatable-mappings-valueset-1'
fsh-generated/resources/ConceptMap-example-study-data-dictionary-conceptmap-1.jsonThe code 'C1305855' in the system https://uts.nlm.nih.gov/uts/umls is not valid in the value set 'https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/datatable-mappings-valueset-1'
fsh-generated/resources/ConceptMap-example-study-data-dictionary-conceptmap-1.jsonThe code 'C0872128' in the system https://uts.nlm.nih.gov/uts/umls is not valid in the value set 'https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/datatable-mappings-valueset-1'
fsh-generated/resources/ConceptMap-example-study-data-dictionary-conceptmap-1.jsonThe code 'MONDO:0017705' in the system http://purl.obolibrary.org/obo/mondo.owl is not valid in the value set 'https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/datatable-mappings-valueset-1'
fsh-generated/resources/ConceptMap-example-study-data-dictionary-conceptmap-1.jsonThe code 'MONDO:0007130' in the system http://purl.obolibrary.org/obo/mondo.owl is not valid in the value set 'https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/datatable-mappings-valueset-1'

ED_INVARIANT_EXPRESSION_ERROR

fsh-generated/resources/StructureDefinition-ncpi-drs-attachment.jsonError in constraint 'must-be-drs-uri' with expression '$this.url.matches('^drs://.*')': Error evaluating FHIRPath expression: The function matches can only be used on string, uri, code, id but found [http://hl7.org/fhir/StructureDefinition/url] (@char 1)

QUESTIONNAIRE_QR_ITEM_BADOPTION_CS

fsh-generated/resources/QuestionnaireResponse-example-questionnaire-demographics-response-1.jsonThe code provided C99269 cannot be validated in the options value set (Case/Control Vars for 'status' categoricals) in the questionnaire because the system https://uts.nlm.nih.gov/uts/umls is unknown

Questionnaire_QR_Item_StringNoOptions

fsh-generated/resources/QuestionnaireResponse-example-questionnaire-demographics-response-1.jsonCannot validate string answer option because no option list is provided

RESOURCE_CANONICAL_MISMATCH

fsh-generated/resources/CodeSystem-hpo.jsonConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-hpo.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/hpo) does not match the URL (http://purl.obolibrary.org/obo/hp.owl)
fsh-generated/resources/CodeSystem-loinc-answers.jsonConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-loinc-answers.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/loinc-answers) does not match the URL (ncpi:loinc-answers)
fsh-generated/resources/CodeSystem-mondo.jsonConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-mondo.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/mondo) does not match the URL (http://purl.obolibrary.org/obo/mondo.owl)
fsh-generated/resources/CodeSystem-ncit.jsonConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-ncit.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncit) does not match the URL (http://purl.obolibrary.org/obo/ncit.owl)
fsh-generated/resources/CodeSystem-omim.jsonConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-omim.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/omim) does not match the URL (https://omim.org/)
fsh-generated/resources/CodeSystem-tbd-codes.jsonConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-tbd-codes.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/tbd-codes) does not match the URL (http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes)
fsh-generated/resources/CodeSystem-v3-hgvs.jsonConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-v3-hgvs.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/v3-hgvs) does not match the URL (http://varnomen.hgvs.org)
fsh-generated/resources/ValueSet-tbd-codes.jsonConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ValueSet-tbd-codes.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/tbd-codes) does not match the URL (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/tbd-codes)

RESOURCE_ID_MISMATCH

fsh-generated/resources/Questionnaire-example-questionnaire-demographics-1.jsonResource id/url mismatch: example-questionnaire-demographics-1/https://nih-ncpi.github.io/ncpi-fhir-ig/data-dictionary/study-name/demographics

Reference_REF_CantResolve

fsh-generated/resources/QuestionnaireResponse-example-questionnaire-demographics-response-1.jsonUnable to resolve resource with reference 'example-sum-patient-1'

TERMINOLOGY_TX_SYSTEM_NOT_USABLE

fsh-generated/resources/Observation-variant-example-1.jsonThe definition for the Code System with URI 'http://www.ncbi.nlm.nih.gov/refseq' doesnt provide any codes so the code cannot be validated

TERMINOLOGY_TX_SYSTEM_NO_CODE

fsh-generated/resources/Observation-anvil-summary-cmg.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/Observation-anvil-summary-cmg.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/Observation-anvil-summary-phs000711.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/Observation-anvil-summary-phs000711.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/Observation-anvil-summary-phs000711.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/Observation-anvil-summary-phs000711.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/Observation-anvil-summary-phs000711.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/Observation-anvil-summary-phs000711.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/Observation-anvil-summary-phs000711.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/ResearchStudy-ncpi-research-study-01.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/ResearchStudy-research-study-cmg.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/ResearchStudy-research-study-phs000711.jsonA code with no system has no defined meaning. A system should be provided

Terminology_PassThrough_TX_Message

fsh-generated/resources/ActivityDefinition-example-study-data-dictionary-table-1.jsonThe CodeSystem https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/example-study-data-dictionary-dataset-codesystem-1 is unknown (from Tx-Server) for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/example-study-data-dictionary-dataset-codesystem-1#demographics'
fsh-generated/resources/Condition-disease-example-1.jsonUnknown Code 'NCIT:Neuroblastoma' in the system 'http://purl.obolibrary.org/obo/ncit.owl|0.2.0' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment for 'http://purl.obolibrary.org/obo/ncit.owl#NCIT:Neuroblastoma'
fsh-generated/resources/Observation-anvil-summary-cmg.jsonWrong Display Name 'Variable Summary' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Summary - should be 'Summary Data' (for the language(s) '--') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Summary'
fsh-generated/resources/Observation-anvil-summary-cmg.jsonWrong Display Name 'Number of Samples' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#SampleCount - should be 'Number of samples that are part of this study' (for the language(s) '--') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#SampleCount'
fsh-generated/resources/Observation-anvil-summary-cmg.jsonWrong Display Name 'Number of Participants' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Participant - should be 'Number of participants that are part of this study' (for the language(s) '--') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Participant'
fsh-generated/resources/Observation-anvil-summary-phs000711.jsonWrong Display Name 'Variable Summary' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Summary - should be 'Summary Data' (for the language(s) '--') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Summary'
fsh-generated/resources/Observation-anvil-summary-phs000711.jsonWrong Display Name 'Number of Samples' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#SampleCount - should be 'Number of samples that are part of this study' (for the language(s) '--') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#SampleCount'
fsh-generated/resources/Observation-anvil-summary-phs000711.jsonWrong Display Name 'Number of Participants' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Participant - should be 'Number of participants that are part of this study' (for the language(s) '--') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Participant'
fsh-generated/resources/Specimen-ncpi-research-study-01-specimen-01.jsonUnknown Code 'C17610' in the system 'http://purl.obolibrary.org/obo/ncit.owl|0.2.0' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment for 'http://purl.obolibrary.org/obo/ncit.owl#C17610'
fsh-generated/resources/StructureDefinition-study-group.jsonUnable to find code 44807982 in http://snomed.info/sct (version http://snomed.info/sct/900000000000207008/version/20230901); Unknown Code '44807982' in the system 'http://snomed.info/sct|http://snomed.info/sct/900000000000207008/version/20230901'; The provided code 'http://snomed.info/sct#44807982' is not in the value set 'http://hl7.org/fhir/ValueSet/@all' (from Tx-Server) for 'http://snomed.info/sct#44807982'
fsh-generated/resources/StructureDefinition-study-group.jsonUnable to find code 44807982 in http://snomed.info/sct (version http://snomed.info/sct/900000000000207008/version/20230901); Unknown Code '44807982' in the system 'http://snomed.info/sct|http://snomed.info/sct/900000000000207008/version/20230901'; The provided code 'http://snomed.info/sct#44807982' is not in the value set 'http://hl7.org/fhir/ValueSet/@all' (from Tx-Server) for 'http://snomed.info/sct#44807982'

Terminology_TX_System_NotKnown

fsh-generated/resources/ActivityDefinition-example-study-data-dictionary-table-1.jsonCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
fsh-generated/resources/Observation-diagnostic-implication-1.jsonCode System URI 'http://fhir.ncpi-project-forge.io/ValueSet/condition-inheritance-vs' is unknown so the code cannot be validated
fsh-generated/resources/Observation-example-observation-data-row-1.jsonCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
fsh-generated/resources/Observation-example-study-summary-gender.jsonCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
fsh-generated/resources/Observation-example-study-summary-gender.jsonCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
fsh-generated/resources/Observation-example-study-summary-gender.jsonCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
fsh-generated/resources/Observation-variant-example-1.jsonCode System URI 'https://www.ncbi.nlm.nih.gov/gene' is unknown so the code cannot be validated
fsh-generated/resources/Observation-variant-example-1.jsonCode System URI 'http://fhir.ncpi-project-forge.io/ValueSet/loinc-answers' is unknown so the code cannot be validated
fsh-generated/resources/QuestionnaireResponse-example-questionnaire-demographics-response-1.jsonCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
fsh-generated/resources/StructureDefinition-study-summary.jsonCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
fsh-generated/resources/StructureDefinition-study-summary.jsonCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
fsh-generated/resources/StructureDefinition-study-variable-summary.jsonCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
fsh-generated/resources/StructureDefinition-study-variable-summary.jsonCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated

VALUESET_SHAREABLE_MISSING

fsh-generated/resources/ValueSet-condition-inheritance-vs.jsonPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present
fsh-generated/resources/ValueSet-datatable-mappings-valueset-1.jsonPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present
fsh-generated/resources/ValueSet-datatable-valueset-1.jsonPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present
fsh-generated/resources/ValueSet-example-study-data-dictionary-case-control-vs-1.jsonPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present
fsh-generated/resources/ValueSet-ncpi-vs.jsonPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present