NCPI FHIR Implementation Guide
0.2.0 - ci-build

NCPI FHIR Implementation Guide - Local Development build (v0.2.0). See the Directory of published versions

Table of Contents

.. 0 Table of Contents
... 1 Home
... 2 Authors
... 3 Background
... 4 Childhood Cancer
... 5 Contact
... 6 Downloads
... 7 Ehr
... 8 Example Raw Data
... 9 Example Study Metadata
... 10 Family
... 11 FHIR Basics
... 12 Files
... 13 Finding a Research Study
... 14 Harmonization
... 15 Ig Versioning
... 16 Modular Ig
... 17 Ncpi
... 18 Participant
... 19 Performing a Genomic Analysis
... 20 Rare Disease
... 21 Research Study
... 22 Structure Definition Study Data Dictionary Variable Note
... 23 Study Metadata
... 24 Tabular
... 25 Use Case Tabular Data
... 26 Use Cases
... 27 Using Source Data
... 28 Artifacts Summary
.... 28.1 DRS Document Reference
.... 28.2 NCPI Disease
.... 28.3 NCPI Family Relationship
.... 28.4 NCPI Research Study
.... 28.5 NCPI Phenotype
.... 28.6 Raw Data Observation
.... 28.7 Research Document Reference
.... 28.8 Research Task
.... 28.9 NCPI Data Dictionary Harmony
.... 28.10 NCPI Study Data Dictionary Data Table
.... 28.11 NCPI Study Data Dictionary Data Variable
.... 28.12 NCPI Study Group
.... 28.13 Study Summary
.... 28.14 Study Variable Summary
.... 28.15 DRS Attachment
.... 28.16 Supporting Information
.... 28.17 Condition Inheritance Pattern
.... 28.18 Disease Codes
.... 28.19 Case/Control Vars for 'status' categoricals
.... 28.20 Harmonized ValueSet for data table
.... 28.21 Table ValueSet
.... 28.22 LOINC Answers
.... 28.23 NCPI FHIR Codes
.... 28.24 Phenotype Codes
.... 28.25 tbd-codes
.... 28.26 Condition Inheritance Pattern
.... 28.27 Dataset CodeSystem (lists all tables)
.... 28.28 Datatable CodeSystem (lists all variables)
.... 28.29 Human Phenotype Ontology
.... 28.30 Human Genome Variation Society nomenclature
.... 28.31 LOINC Answers
.... 28.32 Mondo Disease Ontology
.... 28.33 NCI Thesaurus
.... 28.34 NCPI FHIR Codes
.... 28.35 Data Types for NCPI Research
.... 28.36 Online Mendelian Inheritance in Man
.... 28.37 ToBeDeterminedCodes ('TbdCodes')
.... 28.38 Summary detail for Center for Mendelian Genomics
.... 28.39 Baylor Hopkins Center for Mendelian Genomics (BH CMG)
.... 28.40 diagnostic-implication-1
.... 28.41 diagnostic-report-1
.... 28.42 disease-example-1
.... 28.43 drs-document-reference-example-1
.... 28.44 Example Encounter Study 01 Patient 01
.... 28.45 Example of Raw Data
.... 28.46 Example of a Questionnaire to Represent Raw Data
.... 28.47 Example of a QuestionnaireResponse to Represent Raw Data
.... 28.48 Concept Map showing representing harmonization mappings
.... 28.49 Data-Dictionary Table
.... 28.50 Example Study Data Dictionary Variable subjectid
.... 28.51 Example Study Data Dictionary Variable gender
.... 28.52 Example Study Data Dictionary Variable age_at_enrollment
.... 28.53 Example Study Data Dictionary Variable bmi
.... 28.54 Data Dictionary Variable status
.... 28.55 Example Variable Summary with categories (gender)
.... 28.56 Example Group used for Summary Results
.... 28.57 family-relationship-example-1
.... 28.58 family-relationship-example-2
.... 28.59 family-relationship-example-3
.... 28.60 family-relationship-example-4
.... 28.61 ncpi-research-study-01
.... 28.62 ncpi-research-study-01-group-01-main
.... 28.63 ncpi-research-study-01-patient-01
.... 28.64 ncpi-research-study-01-patient-02
.... 28.65 NCPI Research Study 01 Specimen 01
.... 28.66 organization-example-1
.... 28.67 patient-example-1
.... 28.68 patient-example-2
.... 28.69 patient-example-3
.... 28.70 phenotype-example-1
.... 28.71 practitioner-example-1
.... 28.72 practitioner-role-example-1
.... 28.73 research-document-reference-example-1
.... 28.74 research-study-cmg
.... 28.75 research-study-example-1
.... 28.76 research-study-phs000711
.... 28.77 research-subject-example-1
.... 28.78 research-subject-example-2
.... 28.79 research-subject-example-3
.... 28.80 research-subject-study-01-patient-01
.... 28.81 research-subject-study-01-patient-02
.... 28.82 specimen-example-1
.... 28.83 task-example-1
.... 28.84 task-example-2
.... 28.85 variant-example-1